PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC170_p12
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 320aa    MW: 35639 Da    PI: 4.9328
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC170_p12genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.22e-051531931055
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 ++   +iN+++  L++llP+a     +K +  + L +A++Y+  Lq
  RrC170_p12 153 KQKQTNINKRMRDLQDLLPNA-----QKDDNEALLNEAINYMTTLQ 193
                 233358**************9.....8***************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.5E-9142204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.31E-6142197No hitNo description
PROSITE profilePS5088810.245143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-10150214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010017Biological Processred or far-red light signaling pathway
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MNHVAFTLTD QEYMELVFEN GQILAKSQRS NGLSLQNQRT KSIVDLYEAE YNEDFKKSVH  60
IHDVGTSNKN LIDTQTLKAS SSKRMVVDYE NRNDIVPPDE QSAVAERSVE LDYESTDFTE  120
DSEESTYQSS SLDDLRSQVP ARTSKVLVKR RRKQKQTNIN KRMRDLQDLL PNAQKDDNEA  180
LLNEAINYMT TLQLQVQMMT MGNRFVTPAT MLPLAPHYSQ MGLATGMQMG VPQLLPAPVI  240
GAGFPLVGNS PDVLRVLNHP GLMPIQNSAL FTPTENYVPQ FVPPACAAFP NQIPNSTTSS  300
NLNDARTDGG NLSGKESDKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147154VKRRRKQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728771e-128AC172877.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH042F19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116884.10.0PREDICTED: transcription factor PIF6 isoform X3
RefseqXP_013605866.10.0PREDICTED: transcription factor PIF6 isoform X4
RefseqXP_013615366.10.0PREDICTED: transcription factor PIF6-like isoform X4
SwissprotQ8L5W71e-131PIF6_ARATH; Transcription factor PIF6
TrEMBLA0A0D3DV120.0A0A0D3DV12_BRAOL; Uncharacterized protein
STRINGBra007660.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134231425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62090.21e-120phytochrome interacting factor 3-like 2